Liquid Biopsy for Disease Monitoring in Non-Small Cell Lung Cancer: The Link between Biology and the Clinic
Gabriela Fernandes, Catarina Sousa, Joana Pereira Reis, Natália Alves Martins, Conceição Souto Moura, Susana Guimarães et al. · 2021 · 20 citationsRead the paper
Introduction: Cell-free DNA (cfDNA) analysis offers a non-invasive method to identify sensitising and resistance mutations in advanced Non-Small Cell Lung Cancer (NSCLC) patients. Next-generation sequencing (NGS) of circulating free DNA (cfDNA) is a valuable tool for mutations detection and disease′s clonal monitoring. Material and methods: An amplicon-based targeted gene NGS panel was used to analyse 101 plasma samples of advanced non-small cell lung cancer (NSCLC) patients with known oncogenic mutations, mostly EGFR mutations, serially collected at different clinically relevant time points of the disease. Results: The variant allelic frequency (VAF) monitoring in consecutive plasma samples demonstrated different molecular response and progression patterns. The decrease in or the clearance of the mutant alleles was associated with response and the increase in or the emergence of novel alterations with progression. At the best response, the median VAF was 0% (0.0% to 3.62%), lower than that at baseline, with a median of 0.53% (0.0% to 9.9%) (p = 0.004). At progression, the VAF was significantly higher (median 4.67; range: 0.0–36.9%) than that observed at the best response (p = 0.001) and baseline (p = 0.006). These variations anticipated radiographic changes in most cases, with a median time of 0.86 months. Overall, the VAF evolution of different oncogenic mutations predicts clinical outcomes. Conclusion: The targeted NGS of circulating tumour DNA (ctDNA) has clinical utility to monitor treatment response in patients with advanced lung adenocarcinoma.
What the full text shows
Working prototype- Variant allelic frequency (VAF) of original mutations anticipated radiographic changes in most cases. — median time of 0.86 months (Advanced NSCLC patients monitored via plasma NGS)
- Median VAF at progression was significantly higher than at best response and baseline. — median 4.67% (range 0.0–36.9%) vs 0% (best response) and 0.53% (baseline) (Advanced NSCLC patients)
- T790M resistance mutation was detected in a majority of EGFR-mutant cases at progression. — 60% (6/10) of cases (EGFR-mutant NSCLC patients treated with 1st or 2nd generation TKIs)
- Plasma and tissue NGS results were highly concordant for mutations at progression. — 5/6 cases (EGFR patients who underwent tissue re-biopsy at progression)
- Median VAF of the T790M resistance mutation was lower than the sensitising mutation, suggesting sub-clonality. — median ratio of 2.04 (sensitising/T790M) (EGFR-mutant NSCLC patients)
- Setup
- 101 plasma samples from 13 patients with stage IV adenocarcinoma (median 6 samples per patient).
- How
- An amplicon-based targeted NGS panel (Oncomine Lung cfDNA Assay) was used to serially analyze plasma samples at baseline, best response, and progression. Results were compared against paired tissue DNA sequenced with the Ion AmpliSeq Colon and Lung Cancer Research Panel v2.
- Limitations
- Small sample size (13 patients) · One patient was a 'non-shedder' (ctDNA negative), limiting monitoring utility for that individual · Tissue re-biopsy was only available for 6 of the EGFR patients
Summarized by Gemma 4 from the open-access full text · 8 Oct 2026. Read it